Clin Res Cardiol (2021). 10.1007/s00392-021-01933-9

3D virtual Histopathology of Cardiac Tissue from Covid-19 Patients based on Phase-Contrast X-ray Tomography

M. Reichardt1, P. Møller Jensen2, V. Andersen Dahl2, A. Bjorholm Dahl2, M. Ackermann3, H. Shah4, F. Länger4, C. Werlein4, M. Kühnel4, D. Jonigk4, T. Salditt1, für die Studiengruppe: DZHK

1Institut für Röntgenphysik, Georg-August-Universität Göttingen, Göttingen; 2Technical University of Denmark, Kgs. Lyngby, DK; 3Universitätsmedizin der Johannes Gutenberg-Universität Mainz, Mainz; 4Institut für Pathologie, Medizinische Hochschule Hannover, Hannover;

For the first time, we have used phase-contrast x-ray tomography to characterize the three-dimensional (3d) structure of cardiac tissue from patients who succumbed to Covid-19. By extending conventional histopatholocigal examination by a third dimension, the delicate pathological changes of the vascular system of severe Covid-19 progressions can be analyzed, fully quantified and compared to other types of viral myocarditis and controls. To this end, cardiac samples with a cross section of 3.5 mm were scanned at the synchrotron in a parallel beam configuration. The vascular network was segmented by a deep learning architecture suitable for 3d datasets (V-net), trained by sparse manual annotations. Pathological alterations of vessels, concerning the variation of diameters and the amount of small holes, were observed, indicative of elevated occurrence of intussusceptive angiogenesis, also confirmed by scanning electron microscopy. Further, we implemented a fully automated analysis of the tissue structure in form of shape measures based on the structure tensor. The corresponding distributions show that the histopathology of Covid-19 differs from both influenza and typical coxsackie virus myocarditis.

https://dgk.org/kongress_programme/ht2021/P156.htm